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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
BRCA rs144016180 chr6:43195899 G/GA 3.39E-12 1016 21.77 20.48 10.73 KM Plot
BRCA rs144157169 chr13:28194562 CGGCACCA/C 9.48E-8 1016 21.93 20.23 5.57 KM Plot
BRCA rs144204255 chr4:169263835 T/C 1.45E-5 1013 21.67 21.93 14.1 KM Plot
BRCA rs145071624 chr18:44698392 A/C 3.87E-6 1026 21.7 21.58 18.23 KM Plot
BRCA rs145941647 chr2:86494189 T/TGAGA 2.68E-6 1025 21.93 19.47 12.17 KM Plot
BRCA rs146296864 chr10:16598647 ATCTCACTAATGG/A 2.26E-9 1007 22.2 19.57 14.2 KM Plot
BRCA rs146331662 chr1:41488222 AAG/A 1.75E-5 1020 21.8 20.5 11.2 KM Plot
BRCA rs147229505 chr9:26733187 C/G 3.97E-5 1014 21.47 22.57 20.83 KM Plot
BRCA rs148043492 chr18:44676506 T/TCCGCC 5.05E-6 1027 21.7 21.67 18.23 KM Plot
BRCA rs149940782 chr10:70417541 TA/T 2.87E-5 1011 22.45 19.47 16.77 KM Plot
BRCA rs1628672 chr18:23968295 C/T 5.57E-8 1028 22 20.72 12.9 KM Plot
BRCA rs1668362 chr7:37998451 C/A 1.93E-5 1024 12.52 20.23 23.07 KM Plot
BRCA rs16878888 chr8:32020795 C/G 6.12E-7 1028 4.48 20.28 22.3 KM Plot
BRCA rs16932083 chr9:116045272 A/G 3.36E-6 1028 25.9 23.28 21.43 KM Plot
BRCA rs16948914 chr18:44674094 A/G 1.11E-5 1028 18.13 21.5 21.77 KM Plot